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iCn3D Viewer Tutorial, Part 1
Tutorial of iCn3D structure viewer , Part 1
Finding and viewing hydrogen bonds in iCn3D
iCn3D Viewer Tutorial, Part 2
iCn3D Tutorial: Active Site Modeling
Visualizing ACE2 and SARS-CoV2 spike protein in iCn3D(NCBI) for BIOL112
Tutorial of iCn3D structure viewer, Part 2
Making an element color key in iCn3D
Using iCn3D to look at hydrophobicity
Exploring 3D Molecular Structures with iCn3D, by Alexa M. Salsbury
Using iCn3D to identify amino acids by charge
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Last Updated: October 19, 2026
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The slide is at ncbi.nlm.nih.gov/Structure/ I demonstrate some basic functions in Presenter: Dr. Jiyao Wang, NCBI. You can download the slides here: ... In this example we will be looking at an SH2 domain and how it binds a peptide with a phosphorylated tyrosine. The structure has ... This demonstrates how to find and view hydrogen bonds in a protein structure. This shows how to color each atom by element and label the atoms with the one letter code for the element. This video demonstrates how to select residues by property and how to color by charge. We also learn which colors are used to ...