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9 Visium data: Identifying cell types using deconvolution
Single-Cell Deconvolution for Spatial Transcriptomics... - Simon Baumgart - Poster - ISMB/ECCB 2023
Semi-supervised Learning explained
spSeudoMap: cell type mapping in spatial... - Sungwoo Bae - GenCompBio - Abstract - ISMB 2022
Simultaneous Detection and Classification of Partially and Weakly Supervised Cells
7 Visium data (2024): Subsetting out anatomical regions
Deep learning to integrate histology with spatial transcriptomics
8 Visium data: Subset and integrate with single-cell data (update, August 2023)
Spatial Transcriptomics Data Deconvolution with cell2location in Python
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Last Updated: October 22, 2026
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Kyle Coleman, from University of Pennsylvania, about their Communications Biology paper, " Ying Ma, from University of Michigan, Ann Arbor, about her Nature Biotechnology paper, "Spatially informed In this video, we explain the concept of Alma Andersson, MSc Bioinformatician Department of Gene Technology, KTH SciLifeLab, Stockholm, Sweden Single Authors: Alona Golts (Technion); Ido Livneh (Technion); Aaron Ciechanover (Technion); Michael Elad (Technion) Abstract: ... This is the seventh video of the updated Visium Presented By: James Zou Speaker Biography: James Zou is an assistant professor of biomedical data science and, by courtesy, ... This video describes the steps in integration with single-
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